Bio::Tools::Run::PiseApplication::align2model

Bio::Tools::Run::PiseApplication::align2model is a Bioperl class for align2model - create a multiple alignment of sequences...
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Bio::Tools::Run::PiseApplication::align2model Ranking & Summary

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  • Rating:
  • License:
  • Perl Artistic License
  • Price:
  • FREE
  • Publisher Name:
  • Catherine Letondal
  • Publisher web site:
  • http://search.cpan.org/~birney/bioperl-run-1.4/Bio/Tools/Run/PiseApplication/fasta.pm

Bio::Tools::Run::PiseApplication::align2model Tags


Bio::Tools::Run::PiseApplication::align2model Description

Bio::Tools::Run::PiseApplication::align2model is a Bioperl class for align2model - create a multiple alignment of sequences... Bio::Tools::Run::PiseApplication::align2model is a Bioperl class for align2model - create a multiple alignment of sequences to an existing model.Parameters:align2model (String) run (String) Run name db (Sequence) Sequences to align (-db) model_file (InFile) Model (-i) pipe: sam_model id (String) Sequence identifier(s) selection (separated by commas) (-id) nscoreseq (Integer) Maximum number of sequences to be read (-nscoreseq) adpstyle (Excl) Dynamic programming style (-adpstyle SW (Excl) Sequence scoring (-SW) auto_fim (Switch) Add FIMs automatically (-auto_fim) jump_in_prob (Float) Probability cost of jumping into the center of the model (-jump_in_prob) jump_out_prob (Float) Probability cost of jumping out the center of the model (-jump_out_prob) a2mdots (Switch) Print dots to fill space need for other sequences' insertions (-a2mdots) dump_parameters (Excl) (-dump_parameters) Requirements: · Perl


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