App::Pipeline::Simple Simple workflow manager
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workflow manager manager Perl module perl workflow

App::Pipeline::Simple Description

Workflow management in computational (biological) sciences is a hard problem. App::Pipeline::Simple is a Perl module based on assumption that UNIX pipe and redirect system is closest to optimal solution with these improvements:* Enforce the storing of all intermediary steps in a file. This is for clarity, accountability and to enable arbitrarily big data sets. Pipeline can contain independent steps that remove intermediate files if so required.* Naming of each step. This is to make it possible to stop, restart, and restart at any intermediate step after adjusting pipeline parameters.* detailed logging To keep track of all runs of the pipeline.A pipeline is a collection of steps that are functionally equivalent to a pipeline. In other words, execution of a pipeline equals to execution of a each ordered step within the pipeline. From that derives that the pipeline object model needs only one object that can recursively represent the whole pipeline as well as individual steps.Product's homepage

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