Bio::Seq::PrimaryQual Bio::Seq::PrimaryQual is a Bioperl module with lightweight quality object.
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Bio::Seq::PrimaryQual Tags

Perl module object quality bioperl quality object PrimaryQual class

Bio::Seq::PrimaryQual Description

Bio::Seq::PrimaryQual is a Bioperl module with lightweight quality object. Bio::Seq::PrimaryQual is a Bioperl module with lightweight quality object.SYNOPSIS use Bio::Seq::PrimaryQual; # you can use either a space-delimited string for quality my $string_quals = "10 20 30 40 50 40 30 20 10"; my $qualobj = Bio::Seq::PrimaryQual->new ( '-qual' => $string_quals, '-id' => 'QualityFragment-12', '-accession_number' => 'X78121', ); # _or_ you can use an array of quality values my @q2 = split/ /,$string_quals; $qualobj = Bio::Seq::PrimaryQual->new( '-qual' => @q2, '-primary_id' => 'chads primary_id', '-desc' => 'chads desc', '-accession_number' => 'chads accession_number', '-id' => 'chads id' ); # to get the quality values out: my @quals = @{$qualobj->qual()}; # to give _new_ quality values my $newqualstring = "50 90 1000 20 12 0 0"; $qualobj->qual($newqualstring); Requirements: · Perl

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