Ali Baba Parse PubMed abstracts with this tool
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parser parse abstract

Ali Baba Description

Ali Baba is a an easy-to-use and user-friendly software that can parse PubMed abstracts for biological objects and their relations as discussed in the texts. Ali Baba visualizes the resulting network in graphical form, thus presenting a quick overview over all information contained in the abstracts. With the help of the Java-based Ali Baba app you can see all the abstracts. Main features: Ali Baba helps you to search and visualize protein- and disease-centered information from PubMed. Ali Baba displays the search result in form of a graph -- biological/medical objects such as proteins, diseases, or drugs are nodes; meaningful associations between them are edges. Find out quickly about interacting proteins, genes with implications in diseases, tissue specificity of genes, and others. Ali Baba allows you to search for proteins by simply querying for UniProt IDs instead of typing a long list of synonyms. Ali Baba is able to include pathways from KEGG -- new databases will be featured in the near future. Ali Baba links all information to the underlying literature and databases -- this provides you with detailed information on selected aspects.

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