DTscoreA distance based tandem duplication tree reconstruction algorithm | |
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- License:
- Freeware
- Publisher Name:
- Olivier Elemento
- Operating Systems:
- Windows All
- File Size:
- 224 KB
DTscore Tags
- sequence duplication File reconstruction DVD Duplication AVL-tree algorithm Packet Reconstruction Duplex Reconstruction nucleotide sequence nucleotide 2D reconstruction Surface Reconstruction Reconstruction tree generating algorithm code duplication duplication detector view tree algorithm tree algorithm viewer tree algorithm binary tree algorithm distance-based analysis consistency based algorithm gene duplication phylogeny reconstruction cophylogeny reconstruction reconstruction algorithm tandem duplication phylogenetic reconstruction reconstruction table reconstruction viewer find Nested Tandem Repeats spreadsheet reconstruction screenium for pc northwest race chat install pdf adabe watch disney 39 ipod chinese input bitcomet for vista guardian ver2.1 symbian anti virus nokia6300 www.kompozer.com ware blackberry 8900 volumen nu s systray control 2.0
DTscore Description
DTscore application was developed to be a distance based tandem duplication tree reconstruction algorithm. It is based on a simple tandem duplication model, which assumes unequal recombination (crossover) as the only duplication mechanism. All it takes as input is a distance matrix between copies. In this matrix, the rows and columns need to be ordered in the same way as the copies are ordered on the locus. DTscore can be applied to relatively large datasets (more than a hundred copies). Distances can be calculated using programs such as DNADIST (nucleotide sequences) or PROTDIST (protein sequences) from the PHYLIP package. Heterogeneous rates of substitution among sites can be dealt with using the GAMMA method, for example.
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