UNPHASED Genetic association analysis application.
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UNPHASED Tags

analyzer analysis Genetic algorithm File Association Manage Association Create Association Association Association Manager render genetic image genetic image action association create genetic algorithm genetic data analysis genetic data jar association fix genetic change genetic Display File Association Genetic System dafault image association Display Association Association Builder create file association make file association edit program association make genetic algorithm Association Fix Association Fixer Home Owners Association genetic sequence genetic information Association Changer Change Association icon association association rule FileType Association application analysis association handler automate association association tracker analyze genetic algorithm Genetic code implement genetic algorithm database association rules genetic map creator create genetic map control file association file association controler manage file association genetic algorithm component downstream genetic program analysis application Genetic transduction pathway XnView association genetic map view association rules genetic data sets analysis executable association haplotype association test genetic variation analysis analyze genetic variation two-allele genetic simulation genetic distance analysis codominant genetic markers genetic linkage maps analysis simulate genetic map genetic map simulation genetic model genetic drift haplotype association identify genetic barriers genetic diversity simulation molecular genetic extension association manager genetic association analysis analyze genetic association implement genotype effect genetic differentiation association test display genetic code genetic optimizing

UNPHASED Description

UNPHASED is a small, simple, Java based application specially designed to offer users a versatile tool for performing genetic association analysis. This utility implements maximum-likelihood inference on haplotype and genotype effects while allowing for uncertain phase and missing genotypes. Many of the commonly performed analyses are provided including transmission / disequilbrium tests, global and individual tests for haplotypes, tests that account for associations of nearby loci, tests of gene-gene interaction, adjustments for environmental covariates, genotype tests, comparison of risk between different haplotypes, and permutation tests. Main features: Analysis of nuclear families and unrelated subjects, and combinations of the two Analysis of discrete or quantitative traits Maximum likelihood treatment of missing genotype data and uncertain haplotypes Global association tests and tests of individual haplotypes Conditioning tests that allow for previous associations of linked loci Inclusion of information from additional tag markers Support for non-genetic covariates including parent-of-origin Permutation tests allowing for multiple testing

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