FragmentationAnalyzerA standalone Java tool to analyze MS/MS fragmentation data | |
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FragmentationAnalyzer Ranking & Summary
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- License:
- Apache License 2.0
- Publisher Name:
- Harald Barsnes, Lennart Martens
- Operating Systems:
- Windows All
- File Size:
- 12.2 MB
FragmentationAnalyzer Tags
- spectra analyze fragmentation fragmentation Fragmentation Analyzer analyze fragmentation data MS/MS fragmentation data MS/MS fragmentation data vonage for blackberry english dts mp3 orkut account spy free ct scan japanese letters a nero dvd to gtalk sniffer monitor phone animated wallpaper multimedia websites for srf viewer u3i image information fls 10 patch fallen angel s
FragmentationAnalyzer Description
Fragmentation Analyzer is a Java-based open source instrument that can be used to analyze MS/MS fragmentation data. Nine different analysis types are supported: · Spectra Visualization - visualize the MS/MS spectra with fragment ion annotation, zooming and manual de-novo-sequencing. · Intensity Box Plots - analyze intensity variation for a set of identification of the same peptide. · Intensity Correlation - detect how the intensity correlates with the spread in intensity. · Intensity Meta Plots - further analyze the variations in intensity. · Mass Error Scatter Plots - visualize the mass error spread in a set of selected identifications/spectra. · Mass Error Bubble Plots - same as Mass Error Scatter Plots but with peak intensities added. · Mass Error Box Plot - analyze the variation in mass errors. · Fragment Ion Probability Plot - analyze the probability of observing specific fragment ions. · Fragment Ion Heat Map - compare fragmentation using heat maps of correlation data. Main features: Supports three input formats: ms_lims 7 Mascot Dat Files OMSSA OMX Files
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